bionty.Phenotype

class bionty.Phenotype(name: str, ontology_id: str | None, abbr: str | None, synonyms: str | None, description: str | None, parents: list[Phenotype], public_source: PublicSource | None)

Bases: BioRegistry, TracksRun, TracksUpdates

Phenotypes - Human Phenotype, Phecodes, Mammalian Phenotype, Zebrafish Phenotype.

Notes

For more info, see tutorials Manage biological registries and Phenotype.

Bulk create Phenotype records via from_values.

Examples

>>> record = bionty.Phenotype.from_public(name="Arachnodactyly")
>>> record.save()

Attributes

objects Manager

Fields

created_at DateTimeField

Time of creation of record.

created_by ForeignKey

Creator of record, a User.

run ForeignKey

Last run that created or updated the record, a Run.

updated_at DateTimeField

Time of last update to record.

id AutoField

Internal id, valid only in one DB instance.

uid CharField

A universal id (hash of selected field).

name CharField

Name of the phenotype.

ontology_id CharField

Ontology ID of the phenotype.

abbr CharField

A unique abbreviation of phenotype.

synonyms TextField

Bar-separated (|) synonyms that correspond to this phenotype.

description TextField

Description of the phenotype.

public_source ForeignKey

PublicSource this phenotype associates with.

previous_runs ManyToManyField

Sequence of runs that created or updated the record.

parents ManyToManyField

Parent phenotype records.

artifacts ManyToManyField

Artifacts linked to the phenotype.

Methods